Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs9996403 chr4:4727191 C/T 1.81E-6 111 4.1 20.77 12.65 KM Plot
LGG rs10061474 chr5:169006461 A/G 1.69E-8 505 22.37 23.63 6.83 KM Plot
LGG rs10076522 chr5:169006552 C/G 1.65E-8 506 22.37 23.85 6.83 KM Plot
LGG rs1013504 chr10:952816 T/C 3.6E-5 485 22.22 24.07 14.65 KM Plot
LGG rs1013505 chr10:953273 C/T 9.87E-6 487 22.6 22.83 14.5 KM Plot
LGG rs10137990 chr14:24425058 G/T 4.24E-5 509 23.63 21 15.53 KM Plot
LGG rs10137992 chr14:24421472 A/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs10140992 chr14:24422225 A/G 4.08E-5 508 23.58 21 15.53 KM Plot
LGG rs10141091 chr14:24422366 A/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs10142568 chr14:24417796 A/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs10145440 chr14:24420034 C/T 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs10148823 chr14:24421161 C/A 4.32E-5 503 23.58 21.15 15.53 KM Plot
LGG rs10149094 chr14:24421381 C/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs10150939 chr14:24419271 T/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs10158616 chr1:204162142 G/T 1.86E-5 507 22.58 24.77 7.18 KM Plot